Invasion assay An invasion assay in the human respiratory epithelial cell line A549 was performed as described [25] with some modifications. Briefly, an A549 cell line was infected with overnight culture of B. pseudomallei in LB broth containing

0, 170 or 320 mM NaCl at a multiplicity of infection (MOI) of 50 for 3 hrs to bring bacteria in contact with the cells and allow bacterial entry. The monolayers were overlaid with a medium containing 250 μg/ml of kanamycin (Gibco) to kill extracellular bacteria for 1 hr. The viable intracellular bacteria were released from the infected cells at 4 hrs post-infection by lysis with 0.5% Triton X-100 (Sigma-Aldrich) and plated on Trypticase soy agar. Colony forming buy Cediranib units were measured after 36-48 hrs of incubation at 37°C. The percentage invasion efficiency is calculated as the number of intracellular bacteria at 4 hrs post-infection divided by the CFU added × 100. All assays were conducted in triplicate and data from two independent experiments is presented. Statistical analysis In the microarray analysis, the effect of salt on the magnitude of transcription of genes relative to control was

tested for statistical significance using ANOVA with a 5% confidence interval and Benjamini-Hochberg multiple testing correction in GeneSpring (Silicon Genetics). Alternatively, an unpaired t-test was calculated for selected-gene groups at the 5% confidence interval click here in GraphPad Prism 4 program (Statcon). Results were considered significant at a P value of ≤ 0.05. Microarray data accession number The complete microarray data set generated in this study is deposited for public access in the ArrayExpress under accession number E-MEXP-2302. Acknowledgements This work was partially

supported by the Defense Science and Technology Laboratory (UK) and the Carbohydrate Siriraj Grant for Research and Development (Thailand). PP was supported by Siriraj Graduate Scholarship and by the Royal Golden Jubilee Ph.D. Program (PHD0175/2548). We acknowledge the J. Craig Venter Institute for provision of B. pseudomallei/mallei microarrays. Electronic supplementary material Additional file 1: Cluster diagram of sample replicates in this study. Standard correlation scores between microarray pairs are shown in white. (DOC 95 KB) Additional file 2: The effect of NaCl on transcription of bsa T3SS genes in B. pseudomallei BYL719 concentration K96243 (presented in color graph). (DOC 118 KB) Additional file 3: Effect of NaCl on transcription of selected genes associated with the T3SS-1, T3SS-2, and other virulence/non-virulence factors in B. pseudomallei K96243. (DOC 123 KB) Additional file 4: Ninety four genes identified using Self organization maps (SOM) showed expression patterns similar to bopA and bopE levels. (DOC 103 KB) Additional file 5: Effect of NaCl on transcription of genes encoding homologs of known T3SS effectors in B. pseudomallei K96243 (presented in color graph). (DOC 174 KB) References 1.