During these measurements, the plate was enclosed in a small chamber equipped with a window for thermographic measurements to avoid temperature fluctuations and airflow from the incubator. The temperature difference

between a colony and the surrounding medium was determined from the average of the pixels in the infrared image. A typical infrared image is shown in Additional file 1: Figure S3. We also examined the infrared SGC-CBP30 manufacturer images of colonies grown on a thermal gradient medium. The isolated bacteria stored at −80°C were inoculated in LB broth and incubated at 30°C for 12 hours. After this pre-incubation, 10 μl of the culture medium was inoculated on each 1 cm on LB agar plates (10 × 15 cm) that contained 1% (w/v) glucose. The medium plate was

then Cell Cycle inhibitor placed upside down on a table, and a thermal gradient plate (thermal gradient gel electrophoresis system; TITEC Co., Japan) Selleckchem BIIB057 was placed on top of the LB agar plate. The temperature of the thermal gradient plate was controlled using two thermocirculator units. After incubation for 2 days under this thermal gradient, infrared images of the LB agar plate were assessed. The surface temperature of the medium was also measured using a thermocouple thermometer (Testo 950, Testo KK) connected to a super-quick action immersion/penetration probe (diameter = 1.5 mm), which had been calibrated using a highly accurate immersion/penetration probe. An infrared image was calibrated using the data from the thermocouple thermometer. Growth rate determinations for strain TK1401 on LB agar Strain TK1401 that had been stored at −80°C was inoculated in LB broth containing 1% (w/v)

glucose and incubated at 30°C overnight. The turbidity of the culture medium was measured at 590 nm and diluted with LB broth containing 1% (w/v) glucose until its optical density at 590 nm was 0.01. Fifty microliters of this culture medium was inoculated onto LB agar plates that contained 1% (w/v) glucose, which were then incubated at 20.0, 22.5, 27.0, 30.0 32.5, and 35.0°C. After incubation, all bacterial cells that grew on Anacetrapib the medium plates were harvested as follows. LB broth (1 ml) was poured and bacterial cells on the medium plates were suspended using a spreader. This suspension was collected from the medium plate. Another 1 ml of LB broth was poured on the medium plates and the suspension was collected from the medium plate. Both suspensions were collected and centrifuged at 2,000 × g for 10 min. The bacteria pellet was resuspended in 2 ml of LB broth. The turbidity of the suspension was measured at 590 nm, which was used as an estimate of the number of cells. Determination of the number of bacterial cells that grew on each medium plate was replicated thrice for each incubation time.