, 2009). Various structures of Mt-DapD have been obtained, both in native form and in complex

with succinyl-CoA SB203580 datasheet (Schuldt et al., 2008, 2009). A ribbon model of Mt-DapD is shown in Fig. 2. Mt-DapD forms a biologically relevant homotrimer, and each monomer is composed of three distinct domains – an N-terminal α/β-globular domain, a left- handed parallel β helix and a small C-terminal domain (Schuldt et al., 2008, 2009). The amino acid residues Glu 199 and Gly 222 of Mt-DapD are important for enzymatic activity. Mt-DapD is activated by Mg2+, Ca2+ and Mn2+ and inhibited by Co2+ and Zn2+ (Schuldt et al., 2009). The sixth step in this pathway is catalysed by Mt-DapC (Rv0858c), which transfers an amino group

from l-glutamate PLX-4720 in vivo and converts the substrate N-succinyl-2-amino-6-ketopimelate to N-succinyl diaminopimelate by the use of a pyridoxal phosphate (PLP) cofactor (Weyand et al., 2006, 2007). Mt-DapC belongs to the aminotransferase family of class I PLP-binding proteins. Mt-dapC has been heterologously expressed, purified and crystallized in two related crystal forms that arise from a pH difference between the crystallization conditions (Weyand et al., 2006). In the tetragonal crystal form, a monomer was present in the asymmetric unit, whereas in the orthorhombic crystal form, a dimer was present in the asymmetric unit (Weyand et al., 2006). Because of the presence of PLP in the crystal, both crystal forms appeared as pale yellow (Weyand et al., 2006). The three-dimensional structure of Mt-DapC was refined to a resolution of 2.0 Å (Weyand et al., 2007) and displayed the characteristic S-shape of class I PLP-binding proteins. Distinct from other class I PLP structures, Mt-DapC has an eighth β-strand inserted between strands three and four (Weyand et al., 2007). A ribbon diagram of Mt-DapC is shown in Fig. 2. www.selleck.co.jp/products/pci-32765.html Mt-dapE (Rv1202) encodes the N-succinyl-l,l-diaminopimelic

acid desuccinylase. DapE catalyses the hydrolysis of N-succinyl-l,l-diaminopimelic acid (SDAP) to l,l-diaminopimelic acid and succinate (Born et al., 1998; Davis et al., 2006). The enzyme is a metal-dependent peptidase (MEROPS family M28) catalysing the hydrolysis of substrate by water with the help of one or two metal ions located in the active site (Born et al., 1998; Nocek et al., 2010). DapEs have been over-expressed and purified from Helicobacter pylori, E. coli, Haemophilus influenzae and Neisseria meningitidis (Bouvier et al., 1992; Karita et al., 1997; Born et al., 1998; Bienvenue et al., 2003; Badger et al., 2005). DapEs from E. coli and H. influenzae are small proteins (approximately 42 kDa) requiring two Zn2+ ions per mole of polypeptide for their activity (Bouvier et al., 1992; Born & Blanchard, 1999; Bienvenue et al., 2003).