The KR domain reduces carbonyl groups at a specific position of the polyketide chain, and the ARO and CYC domains control chain folding by catalyzing one or more regiospecific cyclization in the polyketide chain. Typical primary products

of these type II PKSs are polyphenols that can be classified into 7 polyketide chemotypes: linear Nutlin3a tetracyclines, anthracyclines, benzoisochromanequinones, tetracenomycins, aureolic acids, and angular angucyclines, as well as a group of pentagular polyphenols [4]. Additional modification by several elaborate tailoring enzymes such as dimerases, P450 monooxygenases, methyltransferases, and glycosyltransferases can further diversify phenolic polycyclic compounds such as actinorhodin [5]. Figure 1 Schematic diagram depicting the activity of type II PKS domains with actinorhodin biosynthesis as an example. Heterodimeric KS and CLF domains catalyze chain

this website initiation and elongation through decarboxylative Selleckchem PF 2341066 condensation of malonyl building blocks, an ACP domain delivers malonyl building blocks to the KS-CLF, and a MCAT domain supplies malonyl groups to the ACP domain. The collective action of these type II PKS domains lead to the formation of highly reactive poly-β-keto intermediates. This nascent polyketide chain is modified into a specific folding pattern by tailoring enzyme domains such as those of KR, ARO, and CYC. The KR domain reduces carbonyl group at a specific position of the polyketide chain, and the ARO and CYC domains control chain folding by catalyzing one or more regiospecific cyclization in the polyketide chain. Whereafter

polyketide chain is modified by various tailoring enzymes into actinorhodin. Currently, a vast majority of polyketides is derived from a single Actinomycetes genus, Streptomyces[6]. It is difficult to culture most microorganisms on earth that produce aromatic polyketides, under standard laboratory conditions because of their different growth rates and difficulties in laboratory manipulation [7]; almost this evidences the fact that there are a few aromatic polyketide producers and that the complete realm of these microorganisms remains to be explored. Furthermore, studies on type II PKSs and their polyketides have been performed on a limited number of genomes. However, the current progress of computational methods and substantial increase of genome sequencing data has created new possibilities to comprehensively characterize polyketide-producing genomes and increase the number of valuable resources in this field [8]. In order to discover novel aromatic polyketides based on genome mining, it is essential to comprehensively analyze various type II PKSs in different organisms to detect type II PKSs and analyze the correlation between domain organizations and polyketide structures.