7%) 0.7478 5 0.0049 0.3239 0.0151 omp25 14 26 (6.6%) 0.8327 7 0.0044 0.0336
0.1309 trpE 14 58 (10.2%) 0.7892 9 0.0054 0.1417 0.0381 gap 12 35 (6.0%) 0.7321 2 0.0023 0.0926 0.0248 dN = non-synonymous substitutions per non-synonymous site. dS = synonymous substitutions per synonymous site All gene fragments had equivalent mol% G+C contents from 56.7% to 61.4% with a mean value of 58.9% that was similar to the mean mol% G+C contents of the O. anthropi chromosomes (56.1%). The genes involved in amino-acid biosynthesis (aroC and trpE) appeared Emricasan cost the most polymorphic. The gene omp25 that codes for an antigenic surface protein displayed a relatively low level of polymorphic sites (6.6%) but the highest genetic diversity level (0.8327). The majority of SNPs in all loci were synonymous (Table 4). However, the omp25 locus displayed the higher rate of non-synonymous SNPs versus synonymous SNPs. The non-synonymous mutations did not correspond to any premature stop codon. MLST revealed a human-associated clonal complex
The MLST data set for the 70 strains contained 44 genotypes or sequences types (STs) (Tables 1 and 2). The largest ST were ST1, ST3, ST4, ST5 and ST32, which contained 7, 6, 6, 3 and 4 isolates, respectively. All the strains belonging to ST3, ST4 and ST5 were clinical isolates whereas ST1 and ST32 grouped strains from man and environment. ST21, ST27 and ST35 corresponded to pairs of geographically unrelated environmental strains, ST7 and ST15 to pairs of clinical strains and the remaining 34 STs corresponded to clinical FER (n = 22) Gemcitabine clinical trial and environmental (n = 12) unique strains. The number of STs per strain did not vary between the clinical (0.64) and the environmental population (0.61). We constructed a minimum-spanning (MS) tree based
on clustering of the MLST profiles as a graphic representation of the population structure (Fig. 1, Tables 1 and 2). In the MS tree, strains formed two major MS clonal complexes MSCC1 (19 strains of both human and environmental origin, 9 STs) and MSCC4 (27 human strains, 13 STs) as well as two minor complexes, MSCC11 (3 human strains, 3 STs) and MSCC33 (2 environmental strains, 2 STs). Using eBURST software , the 44 STs were divided into 2 major clonal complexes, eBCC1 (23 strains of both human and environmental origin; 13 STs; ST1 as predicted founder) and eBCC4 (27 human strains; 13 STs; ST4 as predicted founder), 3 minor clonal complexes eBCC31, eBCC21 and eBCC35 each including 3 strains and 11 singleton STs (Tables 1 and 2). Figure 1 Minimum-spanning tree based on MLST data. Colours indicate the source (clinical in blue or environmental in green) of the strains. The number given in the circle corresponds to the sequence type (ST) number. The number given near the circle corresponds to the number of isolates presenting the ST. The size of SCH 900776 research buy circles is proportional to the number of isolates representing the ST. MSCC for Minimum Spanning Clonal Clomplex.